PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17846-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 180aa    MW: 19165.3 Da    PI: 4.7637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17846-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-06971381055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  TRIUR3_17846-P1  97 KVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 138
                      78******************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.59587137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1288143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-693143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-796142No hitNo description
Gene3DG3DSA:4.10.280.109.5E-1296143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAHCGGGQAA SVESHFQGLL DDDDKYRALC GAFGYLQQQE WPDLSGACYS AFGAPPPPGA  60
ATQATSNGAG NSFTCSGSAS SGGGSAKRKP DAYVDAKVRR ERISERMRYL QELVPGCDKV  120
TGKAGMLDEI INYVQSLQKQ VEVNGAAAWD IASQHLFSGF DAQFQSVQSD CLLDNLKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602382e-98AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606202e-98AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570191.15e-23PREDICTED: transcription factor bHLH63
TrEMBLM8A8R51e-132M8A8R5_TRIUA; Transcription factor bHLH63
STRINGMLOC_57269.21e-29(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-23cryptochrome-interacting basic-helix-loop-helix 1